Aquaveo & Water Resources Engineering News

Incorporating Transport Observation Points into a MT3DMS Model

Have you wanted to incorporate the TOB package while running MT3DMS in GMS? We have a workflow that can help with this, as part of building an MT3DMS model in GMS with a conceptual model approach. This post will review how to incorporate transport observation points into your MT3DMS model in GMS.

To do so, use the following steps:

Transport Observatin Package
  1. With your MT3DMS model already open in GMS, right-click the conceptual model and select New Coverage... to create a new coverage and bring up the Coverage Setup dialog.
  2. While in the Coverage Setup dialog, turn on whichever options you want to be observing for in the Obs. Data column of the Observation Points section.
  3. Once done with the Coverage Setup dialog and with a new coverage created, create some points within the coverage.
  4. Using the Select Points\Nodes tool, select the points you have just created, right-click on one of them, and select Attribute Table… to bring up the Attribute Table dialog.
  5. Set the Type drop-down in the All row to obs. pt in the Attribute Table dialog to set the BC type to Observation Points for the points.
  6. Once done with the Attribute Table dialog and with the points set as observation points, right-click the new coverage and select Map To | MODFLOW/MODPATH to map the new coverage to MODFLOW.
  7. Now select MT3DMS | Basic Transport Package… to bring up the Basic Transport Package dialog.
  8. Select the Packages... button to bring up the MT3DMS/RT3D Packages dialog.
  9. Turn on the option for Transport observation package.
  10. Now select MT3DMS | Transport Observation Package... to bring up the Transport Observation Package dialog.
  11. Now you will have the ability to turn on the option to Compute concentrations at observation points and select coverages with concentration observations to be used.

Try out incorporating transport observation points into MT3DMS models in GMS 10.5 today!

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Tips for Using the Measure Tool in WMS

Have you used the Measure tool in WMS? You probably have, but would you like to know more about the tools capabilities? This post will review the capabilities of the Measure tool and give some tips for using it.

The Measure tool allows you to measure distance, slope, and in some cases angles along a path you define. It is designed to give you real-world measurement sizes, and can be useful when the scale of parts of a model aren't immediately apparent. When the tool is selected, you will be able to define a series of line segments along a path. This path can be continually defined until it is terminated by double-clicking. When the path is terminated, it will disappear from the Graphics Window, but along the bottom of WMS, in the Help Message window, the relevant values will be displayed in red text. These will be updated whenever the Measure tool is used, reflecting the most recent path that was defined.

Example of using the Measure tool

The units for distance and slope will depend on the units set by the projection, or by the project defaults, either ft and ft/ft (feet) or m and m/m (meters). It is recommended to make certain you have set the correct units for your project before using the Measure tool.

Angle will only be reported when a line only has two points, whereas distance and slope are always reported. Angle will be measured in radians. Angle will be calculated by measuring an angle starting from a reference line pointing south from the first point, and ending at the line segment defined by the two points.

If you have a TIN or DEM loaded into the project, the Measure tool will be able to get slope values. When the Measure tool is used on an area without elevation data, the slope will be given a value of zero. Slope will be calculated by taking the distance-weighted average of the slopes of all the segments. For each segment, slope will be calculated by dividing the change in elevation across the points by the xy distance of the segment.

The Measure tool can help you build and design your project with accuracy. Try out the Measure tool in WMS 11.1 today!

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Understanding SRH-2D Post-Processing

Do you want to know more about what happens when SMS completes post-processing for SRH-2D? When running SRH-2D, it helps to understand what exactly is happening during the post-processing phase of the SMS model run. This post will review how post-processing uses interpolation as it goes through SRH-2D.

To understand how post-processing fits into the SRH-2D process, first we need to look at what comes before it. When creating an SRH-2D model in SMS, the data is assigned as nodal data. This means that the boundary conditions, materials and other data is assigned to the nodes of the mesh. SRH-2D requires that the data be assigned to the center of the mesh elements (the centroid).

To allow the nodal data to be used by SRH-2D, SMS uses a pre-processing step that utilizes linear interpolation to interpolate the data that has been modelled in SMS into centroidal data for SRH-2D to use. After SHR-2D has finished processing the data, it creates results that use centroidal data. This is where the post-processor comes in.

The post-processor for SRH-2D takes the SRH-2D results and interpolates the data from centroidal data and converts it into nodal data. This allows SMS to import and display the solution data.

Post-processing for SRH-2D

If the post-processor fails in its attempt, this usually means the centroidal data generated from SRH-2D is not valid. In this case, it could be possible that the model failed to converge even if SRH-2D managed to completely finish its model run. It could also be possible that SRH-2D was made to run an invalid model that resulted in empty solution sets.

For more information on how to use SRH-2D with SMS, see the XMS Wiki article on SRH-2D in SMS. Future versions of SMS may make use of centroidal data without the need to interpolate data.

Now that you understand a little more about how SMS handles post-processing, try out SRH-2D in SMS 13.1 today!

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Using the Drawing Grid in GMS

Have you needed to create precise drawing on your map coverage for your groundwater modeling project in GMS? Using the Drawing Grid display options can help with this. This post will review what these are and how they can be used in your GMS project.

When the drawing grid is turned on, you will have a grid which can be used to reference and measure positions in the project.

The Drawing Grid in the Graphics Window

To access the GMS Drawing Grid display options:

  1. Open up the Display Options dialog, either by going to the Display | Display Options command or clicking on the Display Options macro.
  2. Once the dialog has opened up, select Drawing Grid from the list on the left, and the dialog will populate with the relevant options.

The following is a list of the GMS Drawing Grid display options and what they do.

This Spacing option allows the user to specify by how many units each grid point is separated. This will determine how dense or scattered out the points are, so it is useful to set a value that won’t either be too cluttered or too open.

When the Snap option is selected, all new (not previously existing) vertices, nodes, points, etc., will snap to the nearest grid point when they are being created, or will interactively snap to grid points if they are being dragged. When this is not selected, the drawn grid will have no impact on where they will be placed. Turning this on can be useful when constructing certain features that are meant to conform to the more rigid structure of a grid.

When the Display Grid Lines option is selected, grid lines will be displayed, using the Line spacing increment to determine how many grid points are passed over before another line is drawn. There are also two buttons to the right of this option which will allow the user to customize the look of the lines. Using grid lines can help complement grid points by giving more of a structure to the drawing grid rather than it being just a set of points, especially when the lines are separated at a good distance.

When the Display Grid Points option is selected, grid points will be displayed similar to how the grid lines are displayed, except using the Point spacing increment instead of the Line spacing increment. Grid points not displayed are still functioning as intended within GMS, they just aren’t visible. There are also two buttons to the right of this option which will allow the user to customize the look of the points. Using grid points can help quantify in the Graphics Window where everything is placed and give it orientation, especially when the points are separated at a good distance.

Try experimenting with Drawing Grid display options in GMS 10.5 today!

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Changing the Display Order in WMS

Have you been wanting to change the order that objects are displayed in the Graphics Window for your watershed projects in WMS? Within WMS, there is an option that can allow users to play around with this. This post will review how to utilize the Display Order functionality found in the Display Options dialog within WMS.

To locate the Display Order options in WMS, open up the Display Options dialog, either by clicking the Display Options macro or going to the Display | Display Options... command. Display Order should then be visible as one of the options on the left. There will be a checkbox for if Display Order should be activated or not. By default, this should be turned on.

As might be expected, turning the "Use Display Order" option on will cause objects to be displayed in the order laid out in the Display Order List. When the "Use Display Order" option is turned off, objects will be displayed in front of others based on which have XYZ coordinates closer to the user's eye rather than further. Depending on the scenario, it may be more visually helpful to have the option turned on or off.

For instance, in plan view, a delineated watershed may look better with display order turned on because when it is turned off, objects may look cluttered and bleed through each other. But for another example, in an oblique view, a delineated watershed may look better with display order turned off because when it is turned on, contours may look cluttered because objects are displaying primarily using display order instead of closer ones displaying in front of further ones.

When the "Use Display Order" option is turned on, the Display Order List will be active. The following options can be used to modify the order:

  • Move Up: Moves the selected item one spot higher on the list.
  • Move Down: Moves the selected item one spot lower on the list.
  • Move To Top: Moves the selected item to the very top of the list.
  • Move To Bottom: Moves the selected item to the very bottom of the list.
The Display Order options in WMS

When an item has been moved as far high or low as it can go, any attempt to move it further higher or lower will result in a warning message that you have selected the top or bottom of the list, and to select an item below or above the current selection.

Try out experimenting with display order in WMS 11.1 today!

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Understanding SRH-2D No Flow Boundaries

Do you want to understand more about how SRH-2D uses no flow boundaries? Occasionally, you can encounter various challenges regarding no flow boundaries. This post will review how no flow boundaries interact with SRH-2D in order to avoid potential issues with your SRH-2D model.

Examples of no flow boundaries in SRH-2D

SRH-2D includes different types of no flow boundaries such as:

  • Boundary condition arcs assigned to be a "wall".
  • The elements touching a void in a mesh.
  • The boundaries of a mesh that are not assigned to be inflow, outflow, etc.

Make certain to review all of your no flow boundaries. In particular, if you used a shapefile or another coverage to create your boundary condition coverage review all of the arcs on the coverage. In SMS, the default SRH-2D boundary condition is a "wall", so any arcs on the boundary condition coverage that are not meant to be no flow arcs should be changed or removed. A wall arc will snap to the nearest mesh boundary or void boundary. A wall arc should not be used to define an internal no flow area.

An important aspect to understand for no flow boundaries is that for every element they touch, SRH-2D is essentially being told that water can't flow past the boundary. This changes how SRH-2D computes the flow of water through the model. Large elements that are part of no flow boundaries can impact the model flow more than desired, because the smallest unit SRH-2D can process is a single element. SRH-2D is not designed to assign multiple flow values to a single element.

With this restriction on flow for single elements in mind, large elements can have a disproportionate effect on the model if left in key areas. Therefore, in most cases it is important to make sure that elements around key areas of the model should be more refined. Larger elements should be left in less important areas where they will have less impact.

Now that you understand a little more about no flow boundaries, try out SRH-2D in SMS 13.1 today!

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Using the Equal Color Segment Height Legend Option

Have you wanted the legend to better represent the scale of your contours in your GMS projects, especially if your intervals are logarithmic? Having a well-configured legend can be very helpful in interpreting the contours of your project in the Graphics Window. And a logarithmic scale for your legend can be useful when you have wide-ranging values in your model that you want to represent in a compact and nuanced way. This post will review how to modify your contour legend options and how your legend is scaled.

To access the GMS Contour Legend Options:

  1. First, contour options can be accessed either through relevant parts of the Display Options dialog (accessed from the Display Options macro) or through clicking on the Contour Options macro directly.
  2. Look to the bottom-left of the dialog and turn on the Legend checkbox.
  3. Click the Options button to bring up the Contour Legend Options dialog where all the contour legend options will be. This post won’t go into most of these options, but they include such options as setting the legend’s height and width, setting where in the graphics window it will be situated, and customizing its font.
Countour legend using an equal height option

The focus of this post will be the option to turn on Equal Color Segment Height. If the Contour Interval has been set to Number or Specified Interval, this option might not seem so useful, as the values for the contours should already be equally separated. But if the Contour Interval has been set to Specified Values, the Populate Values button will be clickable. This brings up the Value Population Method dialog, where different methods can be used to populate the values of the contours, including a Log Scale Method that will create a logarithmic rather than linear scale to the contours and their legend.

Normally, when a logarithmic scale is used for the contours, the legend will be as well, leading to a lot of the space on the legend being taken up by the higher values and a small amount of space being taken up by the more crowded lower values. Turning on Equal color segment height in the Contour Legend Options dialog can correct this, if that is how you want the legend to be displayed. This option will make the legend display logarithmically, with each logarithmic value displaying equally distant from each other. This means that the legend is no longer a linear gradient, but it better reflects the spread of a logarithmic scale when one is used.

Try experimenting with logarithmic contour intervals and other contour options in GMS 10.5 today!

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How to Change the Temp Directory for WMS

Have you needed to specify the location of a temp directory when working with WMS? Starting in WMS 11.1, you can do this when necessary. It isn’t a feature many users will likely need to bother with, but it will come in handy when you need it. This post will review how to specify the temp directory that WMS will use, and why you might want to.

So what is the significance of temp files and temp directories? Temp files are often used in programs that are dealing with files that use larger amounts of data, such as graphics or video editing software. They help save changes, help programs run efficiently, and can restore progress in the case of a sudden crash or shutdown. They are also designed so that they will be deleted automatically when they are no longer needed.

Your computer should have automatic temp directories that it uses, but sometimes it is required to work with these directories yourself. This may be required for security purposes, to troubleshoot issues, to fulfill legal requirements, or for some other reasons.

This can be done by using the following workflow:

  1. Within WMS, click on Edit | Preferences... to bring up the Preferences dialog.
  2. Go to the General tab of the dialog.
  3. Towards the bottom of the dialog, activate the checkbox for Temporary directory.
  4. Click the Select… button that has now been made active to bring up the Browse For Folder dialog.
  5. Use this dialog to locate which folder will be the new temp directory. This dialog also allows a new folder to be added to your file directory with the Make New Folder button.
  6. The textbox next to the Temporary directory should now be populated with the new temp directory address.
  7. It is recommended to restart WMS for the changes to take effect.
The Temporary direction option in the Preferences dialog

Please note that most users should not play around with this feature. Changing the temp directory typically does not speed up performance or improve functionality. Unless you have a specific reason to change the temp file directory, do not change it as doing so indiscriminately can cause some of WMS’s functionality to stop working.

Besides being able to change the temp directory, check out what else can be done with the Preferences in WMS 11.1 today!

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Using BCDATA Lines with SRH-2D

Have you needed to modify how SRH-2D calculates flow around a structure? Using BCDATA lines in SMS may be able to help. New to SMS 13.1, the BCDATA line feature lets you specify a location where a water level or flow rate is extracted for a variable boundary condition.

The BCDATA line is primarily used to adjust how flow is calculated going into or leaving a structure. If there is high skew or rapid drawdown at the entry or exit of the structure then you should consider using a BC Data line. It indicates that rather than performing flow computations directly at the site of the structure, they should be performed at the location of the BCDATA line.

There are a few applications for a BCDATA line. For instance, it can be used on a structure such as a weir or culvert. When SRH-2D computes flow through or over a structure, it uses an average water surface elevation. When no BCDATA line is present, SRH-2D computes right along the nodes where the upstream boundary condition arc has been mapped. If an upstream or downstream BCDATA line exists, the water level can be computed there rather than at the actual edges of the structure. The BCDATA line should typically be located one or two cells upstream or downstream from the structure to get out of the zone of influence of the structure itself. This avoids drawdown caused by the flow going through or over the structure.

To create a BCDATA line and assign it to a structure, use the following workflow:

  1. Use the Create Feature Arc tool to create a line a few elements long, ideally about 1 to 2 elements away from the upstream or downstream arc. Create it perpendicular to the arc and along the centerline.
  2. Using the Select Feature Arc tool, select the line you have just created, right-click it, and select Assign BC… to bring up the SRH2D Assign BC dialog.
  3. Set the BC Type to Bc Data. Make sure to provide a label name that is unique in the coverage. Then click OK to close the dialog.
  4. Now select the upstream or downstream arc that is meant to be associated with the BCDATA line, right-click it, and select Assign BC… to bring up the SRH2D Assign BC dialog.
  5. Scroll down to the General structure options section at the bottom. Depending on whether the arc selected is upstream or downstream, check the box by the appropriate BCDATA line option.
  6. Use the drop-down that populates to select the label you previously specified for the BCDATA line. Then click OK to close the dialog.

The BCDATA line will now be assigned to the structure.

Example of a BCDATA Line

It can also be used on a Link or an EXIT-H boundary condition that you have specified using a rating curve. Normally, without a BCDATA line, SRH-2D computes the average flow directly at the line and then extracts the water level from the curve. When a BCDATA line does exist, the flow rate (Q) is computed across the BCDATA line, like a monitor line, rather than exactly at the boundaries.

Try using BCDATA lines with SRH-2D in SMS 13.1 today!

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Using A Well Pumping Rate to Calibrate a Model

Have you needed to know how to use a well pumping rate as a calibration parameter in a PEST run? For example, this might be useful in estimating a probabilistic capture zone. We have a workflow that can help with this, utilizing an extraction well and the WEL package for model calibration. This post will review how you can set your MODFLOW parameters in GMS to incorporate well information to be used for parameter estimation.

To do so, use the following steps:

  1. In a well coverage, create a well and give it a constant pumping rate (negative for extraction).
  2. Go to MODFLOW | Parameters... to bring up the Parameters dialog and click the New button to create a new parameter.
  3. Turn on the Show all columns checkbox at the top of the dialog and change the Type value to WELL.
  4. Enter the value that was used for step 1 as the Key, and enter its inverse as the Value.
  5. Enter values for Min and Max that are greater than 0.0. These values and Value will be multiplied by the Q factor later on, which will be -1.0, so positive values listed here will actually become negative.
  6. Turn on the Log Xform checkbox and close the dialog.
  7. Go to MODFLOW | Optional Packages | WEL - Well… to bring up the MODFLOW Well Package dialog.
  8. Enter a Q factor of -1.0 and close the dialog.
  9. Go to MODFLOW | Global Options… to bring up the MODFLOW Global/Basic Package dialog.
  10. Under the Run options section, select Parameter Estimation and close the dialog.
  11. Create a new Observed Flow coverage with Observation Points set to Head in the Coverage Setup dialog, and create a head observation with the Map module active.
  12. Save the project and then click Run MODFLOW to run the PEST Parameter Estimation. When the run is complete, make sure to read the solution into your GMS project.
Example of PEST running using pumping rate as a parameter

Following the above steps will generate solution data where you can use any of the post-processing tools in GMS to review and adjust your model. Try out using well pumping rates in model calibration in GMS 10.5 today!

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